Biophysics

University of California, Berkeley

This is an archived copy of the 2019-20 guide. To access the most recent version of the guide, please visit http://guide.berkeley.edu.

Overview

The Biophysics Graduate Group is an independent PhD program at UC Berkeley. The program trains graduate students for careers at the interface of the biological and physical sciences.

Approximately 60 faculty members, spanning over a dozen departments and groups at UC Berkeley, are affiliated with the Biophysics Group. Students can also work with faculty who are outside of the group.

Many of the tools and methods that drive progress in the biosciences are drawn from the physical and computational sciences. Current trends require that the next generation of scientists acquire expertise in both the biological and physical sciences, with research experience that overlaps traditional academic boundaries. The Biophysics Graduate Group strives to offer that experience to its PhD students.

Research within the group is conducted in the broad areas of structural biophysics and protein dynamics; systems neuroscience; molecular microscopy and optical probes; cell signaling and cellular physiology; computational biology and genomics; brain imaging and bioelectronics; and comparative biomechanics.

The Biophysics Graduate Group is a member of the QB3-Berkeley Program in Quantitative Biosciences and is also part of the Division of Biological Sciences.

Graduate Program

Biophysics: PhD

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Courses

Biophysics

Faculty and Instructors

+ Indicates this faculty member is the recipient of the Distinguished Teaching Award.

Faculty

Hillel Adesnik, Assistant Professor.
Research Profile

Adam Arkin, Professor. Systems modeling.
Research Profile

Eric Betzig, Professor. Physics, molecular and cell biology.
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Steven Brenner, Professor. Computational Biology, Genomics, Protein Function Prediction.
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Steve Brohawn, Assistant Professor. Molecular and cell biology.
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Carlos J. Bustamante, Professor. Nanoscience, structural characterization of nucleo-protein assemblies, single molecule fluorescence microscopy, DNA-binding molecular motors, the scanning force microscope, prokaryotes.
Research Profile

Jamie Cate, Professor. Molecular basis for protein synthesis by the ribosome, RNA, antibiotics, a thermophilic bacterium, escherichia coli.
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Kathy Collins, Professor. Telomerase, non-coding RNAs, RNA silencing.
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Xavier Darzacq, Assistant Professor.
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Karen Davies, Assistant Adjunct Professor. Protein structure, bioenergentic membranes, cellualr organisation, electron cryo tomography.
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Abby Dernburg, Professor. Genomics, chromosome remodeling and reorganization during meiosis, Down syndrome, DNA.
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Michael Deweese, Associate Professor. Machine learning, computation, systems neuroscience, auditory cortex, neural coding.
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Jennifer A. Doudna, Professor. RNA machines, hepatitis C virus, RNA interference, ribosomes.
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David G. Drubin, Professor. Cellular morphogenesis, plasma membrane dynamics, microtubule cytoskeletons, cytoskeletal proteins, morphological development.
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Michael B. Eisen, Professor. Genomics, genome sequencing, bioinformatics, animal development.
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+ Dan Feldman, Professor. Neurobiology, learning, neurophysiology, sensory biology.
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Marla B. Feller, Professor. Neurophysiology, developmental neuroscience.
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Graham R. Fleming, Professor. Chemistry, proteins, chemical and biological dynamics in the condensed phase, ultrafast spectroscopy, body dynamics, liquids, solutions, glasses, photosynthetic proteins, role of solvents in chemical reactions, complex electric fields, electron transfer.
Research Profile

Daniel Fletcher, Professor. Bioengineering, optical and force microscopy, microfabrication, biophysics, mechanical properties of cells.
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+ Robert J. Full, Professor. Energetics, comparative biomechanics, arthropod, adhesion, comparative physiology, locomotion, neuromechanics, biomimicry, biological inspiration, reptile, gecko, amphibian, robots, artificial muscles.
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Jack L. Gallant, Professor. Vision science, form vision, attention, fMRI, computational neuroscience, natural scene perception, brain encoding, brain decoding.
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Hernan G. Garcia, Assistant Professor.
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+ Phillip Lewis Geissler, Professor. Statistical mechanics, theoretical chemistry, microscopic behavior of complex biological and material systems, biomolecular structure and dynamics, nonlinear vibrational spectroscopy.
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Jay T. Groves, Professor. Chemistry, physical chemistry of cell membranes, molecular organization in cell membranes, receptor-ligand binding, spatial rearrangement of receptors, ligands.
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Oskar Hallatschek, Assistant Professor.
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Teresa Head-Gordon, Professor. Computational chemistry, biophysics, bioengineering, biomolecules, materials, computational science.
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James Hurley, Professor. Structural biology and biophysics of membrane remodeling in autophagy, membrane traffic, and HIV biogenesis.
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Nicholas Ingolia, Assistant Professor. Ribosome Profiling, translation, genomics.
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Ehud Y. Isacoff, Professor. Ion channel function, synaptic plasticity, neural excitability, synaptic transmission, the synapse.
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Na Ji, Associate Professor. Physics, molecular and cell biology.

Sung-Hou Kim, Professor. Computational genomics, Structural Biology, drug discovery, disease genomics.
Research Profile

Mimi A. R. Koehl, Professor. Biomechanics, insects, invertebrate functional morphology, fluid dynamics, aerodynamics, marine animals, filtration, gliding vertebrates.
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Richard H. Kramer, Professor. Cells, synaptic transmission, chemical signaling between neurons, ion channels, electrical signals, chemical reagents, synapses.
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Sanjay Kumar, Professor. Biomaterials, molecular and cellular bioengineering, stem cells, cancer biology, translational medicine.
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John Kuriyan, Professor. Structural and functional studies of signal transduction, DNA replication, cancer therapies, phosphorylation.
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Markita Landry, Assistant Professor.
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Luke Lee, Professor. Biophotonics, biophysics, bionanoscience, molecular imaging, single cell analysis, bio-nano interfaces, integrated microfluidic devices (iMD) for diagnostics and preventive personalized medicine.
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Polina Lishko, Assistant Professor. Reproductive and Developmental Biology, ion channels, Physiology of Fertilization and Early Embryo Development.
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Kranthi K. Mandadapu, Assistant Professor. Statistical Mechanics, Continuum Mechanics — Polycrystalline Materials, Biological Membranes, Bacterial Motility.
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Michael A. Marletta, Professor. Chemical biology, molecular biology, structure/function relationships in proteins, catalytic and biological properties of enzymes, cellular signaling, nitric oxide synthase, soluble guanylate cyclase, gas sensing, cellulose degradation, polysaccharide monooxygenases.
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Susan Marqusee, Professor. Amino acids, determinants of protein structure and folding, biophysical, structural and computational techniques, translocation, protein synthesis.
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Andreas Martin, Associate Professor. Proteasome.
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Richard Mathies, Professor of the Graduate School. Genomics, biophysical, bioanalytical, physical chemistry, laser spectroscopy, resonance Raman, excited-state reaction dynamics photoactive proteins, rhodopsins, microfabricated chemical biochemical analysis devices, forensics, infectious disease detection.
Research Profile

Barbara J. Meyer, Professor. Developmental biology, gene expression, genetic determination of sex, regulatory genes, chromosome dynamics, X-chromosome.
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Evan W. Miller, Assistant Professor. Biophysical, bioanalytical and physical chemistry.
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Mohammad Mofrad, Professor. Nuclear pore complex and nucleocytoplasmic transport, mechanobiology of disease, cellular mechanotransduction, integrin-mediated focal adhesions.
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Priya Moorjani, Assistant Professor. Human population genetics and evolutionary biology.
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Eva Nogales, Professor. Biochemistry, complex biological assemblies, structure and regulation of the cytoskeleton, microtubule dynamics, human transcriptional initiation machinery, biophysics.
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Eunyong Park, Assistant Professor. Structure and mechanism of membrane transport proteins, cryo-EM, biochemistry, biophysics.
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Daniel S. Rokhsar, Professor. Biology, collective phenomena and ordering in condensed matter and biological systems, theoretical modeling, computational modeling, behavior of quantum fluids, cold atomic gases, high temperature superconductors, Fermi and Bose systems.
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David Savage, Assistant Professor. Synthetic biology and metabolism.
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Aaron Streets, Assistant Professor. Genomics and evolution of aging and cellular and organismal diversity.
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Peter Sudmant, Assistant Professor. Genomics, genetics, computational biology, structural variation, RNA, diversity, aging, population genetics.
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Frederic Theunissen, Professor. Behavior, cognition, brain, psychology, birdsong, vocal learning, audition, neurophysiology, speech perception, computational neuroscience, theoretical neuroscience.
Research Profile

Evan Williams, Professor. Spectroscopy, molecular structure and dynamics, analytical chemistry, biophysical chemistry, structure and reactivity of biomolecules and biomolecule/water interactions, mass spectrometry, separations, protein conformation, protein and DNA sequencing.
Research Profile

Ke Xu, Assistant Professor. Biophysical chemistry, cell biology at the nanoscale, super-resolution microscopy, single-molecule spectroscopy.
Research Profile

Ahmet Yildiz, Associate Professor. Single molecule biophysics, molecular motors, telomeres.
Research Profile

Roberto Zoncu, Assistant Professor. Biophysics and Structural Biology, MCB.
Research Profile

Contact Information

Biophysics Graduate Group

574 Stanley Hall

Phone: 510-642-0379

Fax: 510-666-3399

biophysicsgrad@berkeley.edu

Visit Group Website

Program Chair

James Hurley (Molecular and Cell Biology)

Phone: 510-643-9483

http://membrane.berkeley.edu/

jimhurley@berkeley.edu

Head Graduate Adviser

Susan Marqusee, MD, PhD (Molecular and Cell Biology)

576 Stanley Hall

Phone: 510-642-7678

marqusee@berkeley.edu

Graduate Program Coordinator

Kate Chase

574 Stanley Hall, MC 3220

Phone: 510-642-0379

katechase@berkeley.edu

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