This is an archived copy of the 2013-14 catalog. To access the most recent version of the catalog, please visit http://bulletin.berkeley.edu/.

Neuroscience

Interdepartmental Graduate Group
Group Office: 450 Li Ka Shing, (510) 642-8915 

Chair: Dan Feldman, PhD (Department of Molecular and Cell Biology)
Group Website: Neuroscience 


Graduate Program

The Neuroscience Graduate Program at UC Berkeley is a unique, diverse PhD training program that offers intensive, integrated training in multiple areas of neuroscience research.

The program involves more than 50 faculty from different campus departments, with expertise ranging from molecular and cellular neuroscience, to developmental neuroscience, systems and computational neuroscience, and human cognitive neuroscience.

We provide a highly interdisciplinary, intellectually dynamic training environment of coursework, research training, and mentoring, within a strong research program that produces fundamental advances in knowledge and cutting-edge techniques.

We welcome highly qualified applicants to join us in better understanding the brain and its functions and disorders.

Faculty in the Neuroscience Graduate Program are involved in three broad research areas: Cellular, Molecular, and Developmental Neuroscience; Systems and Computational Neuroscience; and Cognition, Brain, and Behavior. Individual faculty may be involved in more than one research area.

Applicants to the program should have a bachelor's degree in science from a four-year college and at least one year of laboratory experience. Applicants are required to submit Graduate Record Examination (GRE) General Test scores, and are strongly encouraged to submit one GRE Subject Test score (in biochemistry and cell biology, chemistry, psychology, biology, computer science, or physics).

During the first two years in the program, each student is required to take a minimum of three 3- or 4-unit graduate (200-level) courses chosen from a wide range of specialized graduate courses. Graduate advisers help students tailor their coursework to their individual needs and interests. To ensure breadth in didactic coursework, however, students are required to choose courses that are distributed between at least two subdisciplines of neuroscience (i.e., cell, molecular, and developmental neuroscience; systems and computational neuroscience; and cognition, brain and behavior).

Note: Students, with approval from the graduate adviser, may take courses in other specialized areas important for developing their research foundation, such as biochemistry, genetics, statistics, physics, bioengineering, etc. Independent research in different laboratories starts at the beginning of the first year.

Students are also required to serve as graduate student instructors for at least two semesters during their first three years of study. Graduate students advance to candidacy for the PhD by passing a qualifying examination at the end of the second year in the program. Students are expected to finish their degree within 5 to 6 years.

For detailed information on the graduate program, visit the website, email tleonard@berkeley.edu , or mail your inquiries to Graduate Student Affairs, Neuroscience Institute, UC Berkeley, 450 Li Ka Shing, Berkeley, CA 94720-3370.

Neuroscience PhD Progress through Degree  (PDF)

The Neuroscience Graduate Program has no designated lecture courses, but various affiliated departments offer a wide range of options. A selection is listed below. (For more details, see individual course descriptions.)

General/Survey Courses: Responsible Conduct of Research (MCB 293C).

Cellular, Molecular, and Developmental Neuroscience Courses: Advanced Cellular and Molecular Neurobiology (MCB 261), Advanced Cell Biology (MCB 230), Advanced Genetics (MCB 240), Biochemistry and Molecular Biology (MCB 200), Advanced Developmental Neurobiology (MCB 263), and Advanced Developmental Biology (MCB 231).

Systems and Computational Neuroscience Courses: Advanced Topics in Systems Neuroscience (MCB 262), Functional Neuroanatomy and Laboratory (IB 245 and IB 245L), Behavioral Neuroscience (Psych 210B), Sensory Systems (Psych 210C), Neuronal Mechanisms of Learning and Memory (Psych 290Z), and Neural Computation (VS 265).

Cognition, Brain, and Behavior Neuroscience Courses: Cognitive Neuroscience (Psych 210A), Learning and Memory (Psych 210D), Thought and Language (Psych 210E), Hormones and Behavior (Psych 211), Functional MRI Methods (Psych 214), Proseminar: Biological, Cognitive, and Language Development (Psych 240A), and Biological and Public Health Aspects of Alzheimer's Disease (PH C217).

Recommended Statistical Methods Courses: Data Analysis (Psych 205), Linear Systems Theory (EECS 221A), Random Processes and Systems (EECS 226A), Information Theory and Coding (EECS 229), Analysis of Time Series (Stat 248), and Statistical Learning Theory (Stat 241A).

Other selected seminar courses include: Graduate Seminar on Specialized Neuroscience Topics (MCB 290 series), Graduate Seminar on Specialized Topics in Biological and Cognitive Psychology (Psych 290 series), and Special Seminars in Vision Science (VS 298 series).

The Neuroscience Graduate Program also sponsors an annual campuswide Neuroscience retreat, weekly seminar series, and a graduate student Neuroscience Journal Club.

NEUROSC C129/PB HLTH C129 The Aging Human Brain 3 Units

Department: Neuroscience; Public Health

Course level: Undergraduate

Term course may be offered: Fall. Offered odd-numbered years.

Grading: Letter grade.

Hours and format: 2 hours of Lecture and 1 hour of Discussion per week for 15 weeks.

The course will survey the field of the human brain, with introductory lectures on the concepts of aging, and brief surveys of normal neuroanatomy, neurophysiology, neurochemistry, and neuropsychology as well as methods such as imaging, epidemiology, and pathology. The neurobiological changes associated with aging will be covered from the same perspectives: neuropsychology, anatomy, biochemistry, and physiology. Major neurological diseases of aging including Alzheimer's and Parkinson's disease will be covered, as will compensatory mechanisms, neuroendocrine changes with aging, depression and aging, epidemiology of aging, and risk factors for decline.

Instructor: Jagust

NEUROSC C160/MCELLBI C160 Introduction to Neurobiology 4 Units

Department: Neuroscience; Molecular and Cell Biology

Course level: Undergraduate

Terms course may be offered: Fall and spring

Grading: Letter grade.

Hours and format: 3 hours of Lecture and 1 hour of Discussion per week for 15 weeks.

Prerequisites: 102 or 100, Biology 1A and 1AL, Physics 8A-8B.

An introductory course designed to provide a general understanding of the nervous system including how it functions, how it develops, and how it changes with learning and memory. Analysis from the level of molecules to cells to simple circuits to complex networks to higher brain functions.

NEUROSC C217D/PB HLTH C217D Biological and Public Health Aspects of Alzheimer's Disease 3 Units

Department: Neuroscience; Public Health

Course level: Graduate

Term course may be offered: Spring

Grading: Letter grade.

Hours and format: 2 hours of seminar/discussion per week.

Prerequisites: Graduate standing or consent of instructor.

This course will survey the field of Alzheimer's disease (AD) from a biological and public health perspective by reading original research papers in the fields of medicine, neuroscience, and epidemiology. The course will begin with a historical survey of the concept of AD, followed by a description of clinical and neuropathological features. Subsequent classes will cover the genetics and molecular biology of the disease, as well as biomarkers, epidemiology, risk factors, treatment, development of new diagnostic approaches, and ethical issues. The course will also serve as a model for the analysis of complex diseases with multiple genetic and environmental causes, and late onset neurodegenerative diseases. The course will also serve as a model for the analysis of complex diseases with multiple genetic and environmental causes and late-onset neurodegenerative disease.

Instructor: Jagust

NEUROSC C260/MCELLBI C260 Introduction to Neurobiology 4 Units

Department: Neuroscience; Molecular and Cell Biology

Course level: Graduate

Term course may be offered: Fall

Grading: Letter grade.

Hours and format: 3 hours of Lecture and 1 hour of Discussion per week for 15 weeks.

An introductory course designed to provide a general understanding of the nervous system including how it functions, how it develops, and how it changes with learning and memory. Analysis from the level of molecules to cells to simple circuits to complex networks to higher brain functions.

NEUROSC C261/MCELLBI C261 Advanced Cellular Neurobiology 3 Units

Department: Neuroscience; Molecular and Cell Biology

Course level: Graduate

Term course may be offered: Spring. Offered every spring.

Grading: Letter grade.

Hours and format: 3 hours of lecture per week.

Prerequisites: Molecular and Cell Biology 160.

Physical-chemical basis of membrane potentials, electrotonus, action potential generation and propagation, synaptic transmission, sensory receptor function, and volume conductor potentials.

NEUROSC C262/MCELLBI C262 Advanced Topics in Systems Neuroscience 3 Units

Department: Neuroscience; Molecular and Cell Biology

Course level: Graduate

Term course may be offered: Fall. Offered odd-numbered years.

Grading: Letter grade.

Hours and format: 3 hours of lecture/discussion per week.

Prerequisites: 160 or equivalent.

Advanced coverage of current research problems in systems-level neuroscience, and experimental and computational techniques used for these studies.

Course may be repeated for credit. Course may be repeated for credit when topic changes. Formerly known as IDS 200B.

NEUROSC C263/MCELLBI C263 Advanced Developmental Neurobiology 3 Units

Department: Neuroscience; Molecular and Cell Biology

Course level: Graduate

Term course may be offered: Spring. Offered odd-numbered years.

Grading: Letter grade.

Hours and format: 3 hours of Lecture per week for 15 weeks.

Prerequisites: 162 or equivalent.

Advanced level coverage of current research problems in the embryonic and post-embryonic development of invertebrate and vertebrate nervous systems.

NEUROSC C265/VIS SCI C265 Neural Computation 3 Units

Department: Neuroscience; Vision Science

Course level: Graduate

Term course may be offered: Fall. Offered even-numbered years.

Grading: Letter grade.

Hours and format: 3 hours of Lecture per week for 15 weeks.

Prerequisites: Calculus, differential equations, basic probability and statistics, linear algebra, and familiarity with high level programming languages such as Matlab.

This course provides an introduction to the theory of neural computation. The goal is to familiarize students with the major theoretical frameworks and models used in neuroscience and psychology, and to provide hands-on experience in using these models. Topics include neural network models, supervised and unsupervised learning rules, associative memory models, probabilistic/graphical models, and models of neural coding in the brain.

Instructor: Olshausen

NEUROSC 290 Neuroscience First Year Research 2 Units

Department: Neuroscience

Course level: Graduate

Term course may be offered: Spring

Grading: Letter grade.

Hours and format: 2 hours of Seminar per week for 15 weeks.

Prerequisites: Graduate standing in Neuroscience Graduate Group; concurrent enrollment in 291A-291B.

Seminar on the presentation and evaluation of research results for first-year neuroscience graduate students. During the first weeks, faculty present their research (FERPS); later, students present individual research results and evaluate their own and each other's work. Course enrollment limited to 15.

Instructor: Ngai

NEUROSC 291A Neuroscience Introduction to Research 4 - 12 Units

Department: Neuroscience

Course level: Graduate

Terms course may be offered: Fall and spring

Grading: Letter grade. This is part one of a year long series course. A provisional grade of IP (in progress) will be applied and later replaced with the final grade after completing part two of the series.

Hours and format: 20 to Forty hours of Laboratory per week for 15 weeks.

Prerequisites: Graduate standing in Neuroscience Graduate Group; consent of instructor.

Closely supervised, intensive laboratory experimental research under the direction of an individual faculty member. For first-year neuroscience graduate students, this course will provide an introduction to experimental methods and research approaches in the different areas of neuroscience. Grade awarded on completion of sequence, which includes 3 ten-week laboratory rotations spread out over the fall and spring semesters.

Instructor: Ngai

NEUROSC 291B Neuroscience Introduction to Research 4 - 12 Units

Department: Neuroscience

Course level: Graduate

Terms course may be offered: Fall and spring

Grading: Letter grade. This is part two of a year long series course. Upon completion, the final grade will be applied to both parts of the series.

Hours and format: 20 to Forty hours of Laboratory per week for 15 weeks.

Prerequisites: Graduate standing in Neuroscience Graduate Group; consent of instructor.

Closely supervised, intensive laboratory experimental research under the direction of an individual faculty member. For first-year neuroscience graduate students, this course will provide an introduction to experimental methods and research approaches in the different areas of neuroscience. Grade awarded on completion of sequence, which includes 3 ten-week laboratory rotations spread out over the fall and spring semesters.

Instructor: Ngai

NEUROSC 292 Neuroscience Graduate Research 3 - 12 Units

Department: Neuroscience

Course level: Graduate

Terms course may be offered: Fall, spring and summer

Grading: Letter grade.

Hours and format: 10 to Forty hours of Laboratory per week for 15 weeks. 15 to 6ty hours of Laboratory per week for 10 weeks.

Prerequisites: Graduate standing in the Neuroscience Graduate Group; advanced approval from instructor.

For graduate students in neuroscience in their second or later years. During the summer, the course will count for 3-6 units. Individual research under faculty supervision. In this course each graduate student conducts basic thesis and dissertation research after successful completion of the first-year laboratory rotation, Neuroscience 291A-291B. Laboratory work provides the basis for students' thesis research, preparation for the preliminary examination, and continued progress toward completion of Ph.D. dissertation.

Course may be repeated for credit. Course may be repeated for credit when topic changes.

NEUROSC 293 Neuroscience Research Review 2 Units

Department: Neuroscience

Course level: Graduate

Terms course may be offered: Fall, spring and summer

Grading: Offered for satisfactory/unsatisfactory grade only.

Hours and format: 2 hours of Seminar per week for 15 weeks. 3 hours of Seminar per week for 10 weeks. 3.5 hours of Seminar per week for 8 weeks. 5 hours of Seminar per week for 6 weeks.

Prerequisites: Concurrent enrollment in 292; graduate standing in the neuroscience program; consent of instructor.

For graduate students in neuroscience in their second or later years. Two hours of seminar per week which complements the individual laboratory work under faculty supervision. Seminar will review current scientific literature and discuss original research performed by faculty, postdoctoral fellows, scientists, and graduate students in individual faculty laboratories.

Course may be repeated for credit. Course may be repeated for credit when topic changes.

NEUROSC 294 Neuroscience Graduate Student Presentation Seminar 1 Unit

Department: Neuroscience

Course level: Graduate

Terms course may be offered: Fall and spring

Grading: Letter grade.

Hours and format: 1 hour of Seminar per week for 15 weeks.

Prerequisites: Graduate student standing.

This course will encompass three important facets of graduate education in the neurosciences: 1) Development of research presentation skills: fourth and fifth year graduate students will present seminars based on their ongoing dissertation research. Preparation and critiques of presentations will focus on organization of conceptual issues, data presentation, and summarization. 2) Exposure to current topics in neuroscience: faculty speakers will present on current issues and topics relevant to scientific development in the neurosciences, such as technical methods, application of analytical and statistical techniques, and organization and preparation of competitive fellowship and other grant applications. 3) Seminar preparation: a crucial aspect of graduate education is the interaction of students with invited seminar speakers - who are often leaders in their fields. A selected number of class meetings will be devoted to the review of scientific articles published by upcoming seminar speakers and/or other related articles in the field.

Course may be repeated for credit. Course may be repeated for credit when topic changes.

NEUROSC 299 Seminars 1 - 3 Units

Department: Neuroscience

Course level: Graduate

Terms course may be offered: Fall and spring

Grading: Letter grade.

Hours and format: 1 to 3 hour of Seminar per week for 15 weeks.

Course that focuses on topical subjects in specific fields of neuroscience.

Course may be repeated for credit. Course may be repeated for credit when topic changes.

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